There is a need for treatment technologies that can eliminate environmental problems associated with anaerobic lagoons. These technologies must be able to capture nutrients, kill pathogens, and reduce emissions of ammonia and nuisance odors. To meet these needs, a full-scale wastewater treatment plant was installed as a demonstration project on one of three 4360-pig (Sus scrofa) production units in a finishing farm in Duplin County, North Carolina. Once the treatment plant was operational, flow of raw manure into the unit’s corresponding lagoon was discontinued and the lagoon was used to store treated wastewater. Water quality was monitored in the converted lagoon and in the two conventional lagoons. A gas chromatographic method was developed to measure concentration of five selected malodorous compounds (phenol, p-cresol, 4-ethylphenol, indole, and skatole) in liquid lagoon samples. Dramatic improvements in the water quality parameters TKN, NH3-N, solids, COD, and BOD in the converted waste lagoon paralleled reductions in malodorous compounds. Nine months after conversion, identified malodorous compounds in liquid extractions averaged 6.6 and 38.8 ng mL(-1) in water from the converted lagoon and the conventional lagoons, respectively. The reduction was particularly marked for p-cresol, 4-ethylphenol, and skatole, all of which make important contributions to swine waste odors due to their characteristic odors and low detection thresholds.